STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2556Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148. (829 aa)    
Predicted Functional Partners:
FSU_2403
Identified by match to protein family HMM TIGR01352.
  
 
   0.794
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
    0.771
FSU_2298
Acyltransferase family protein.
  
     0.764
FSU_2557
Putative 4-hydroxy-2-oxovalerate aldolase; Identified by match to protein family HMM PF00682.
       0.762
FSU_2397
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
    0.761
FSU_0816
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.759
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.753
FSU_1095
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.751
FSU_2398
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
     0.745
FSU_0934
Putative transporter; Identified by similarity to GB:AAN68395.1.
  
     0.736
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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