STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2572Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:CAB43613.1; match to protein family HMM PF04488. (255 aa)    
Predicted Functional Partners:
FSU_2575
Conserved domain protein; Identified by similarity to GB:AAP42194.1.
  
  
 0.772
FSU_2573
Glycosyltransferase, group 2 family; Identified by similarity to GB:CAA57099.1; match to protein family HMM PF00535.
       0.755
FSU_2574
Hypothetical protein; Identified by glimmer; putative.
       0.736
FSU_2576
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
    0.627
FSU_2571
Putative membrane protein.
       0.566
FSU_3245
Putative O-antigen polymerase; Identified by similarity to GB:AAK64372.1.
 
     0.499
FSU_3247
Putative capsular polysaccharide biosynthesis glycosyltransferase; Identified by similarity to GB:BAA82284.1; match to protein family HMM PF00535.
    0.401
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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