STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2573Glycosyltransferase, group 2 family; Identified by similarity to GB:CAA57099.1; match to protein family HMM PF00535. (288 aa)    
Predicted Functional Partners:
FSU_2575
Conserved domain protein; Identified by similarity to GB:AAP42194.1.
 
    0.807
FSU_1430
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
  
     0.772
FSU_2799
Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.
  
 
 0.761
FSU_2574
Hypothetical protein; Identified by glimmer; putative.
       0.757
FSU_2572
Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:CAB43613.1; match to protein family HMM PF04488.
       0.755
FSU_2571
Putative membrane protein.
       0.552
FSU_1215
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.493
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.463
FSU_3224
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534; overlaps another CDS with the same product name.
  
    0.442
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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