STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
FSU_2580Radical SAM domain protein; Identified by match to protein family HMM PF04055. (369 aa)    
Predicted Functional Partners:
FSU_0217
Putative 6-pyruvoyl tetrahydrobiopterin synthase; Identified by match to protein family HMM PF01242.
  
 
 0.908
nrdD
Anaerobic ribonucleoside-triphosphate reductase; Identified by similarity to SP:P07071; match to protein family HMM TIGR02487.
  
 
 0.862
queC
Protein ExsB; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
  
 
 0.826
FSU_2579
Polysaccharide pyruvyl transferase family protein; Identified by match to protein family HMM PF04230.
       0.782
FSU_2581
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_2582
Putative membrane protein; Identified by similarity to GB:AAD56731.1; match to protein family HMM PF01943.
       0.773
FSU_2576
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.556
FSU_2577
Conserved hypothetical protein; Identified by similarity to GB:AAL59716.1; match to protein family HMM PF08843.
       0.556
FSU_2578
Conserved hypothetical protein; Identified by similarity to GB:AAM42389.1.
       0.556
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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