STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2587Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408. (407 aa)    
Predicted Functional Partners:
FSU_2589
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; match to protein family HMM TIGR02379; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.821
FSU_2588
Identified by similarity to SP:P46537; match to protein family HMM PF01071; match to protein family HMM PF02655.
       0.775
FSU_2586
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.773
lysS
lysine--tRNA ligase; Identified by similarity to SP:P14825; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.701
FSU_0710
Carbohydrate kinase, FGGY family; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.
 
  
 0.627
FSU_1367
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447; match to protein family HMM PF07676.
  
     0.546
FSU_1427
Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.
  
 
  0.544
eda
2-deydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by similarity to SP:P44480; match to protein family HMM PF01081; match to protein family HMM TIGR01182.
 
  
 0.544
FSU_2590
Helix-turn-helix DNA-binding domain protein.
       0.506
FSU_0054
Putative acetylxylan esterase; Identified by similarity to GB:AAC14690.1; match to protein family HMM PF03629.
  
  
  0.482
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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