STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2592Identified by match to protein family HMM PF00933; match to protein family HMM PF01915. (678 aa)    
Predicted Functional Partners:
FSU_2622
Glycosyl hydrolase, family 16; Identified by match to protein family HMM PF00722.
 
 0.751
FSU_2269
Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
 
  
 0.711
FSU_2272
Alpha-galactosidase; Identified by match to protein family HMM PF02065; match to protein family HMM PF03422.
  
  
 0.704
FSU_1695
Beta-lactamase; Identified by match to protein family HMM PF00144.
 
 0.677
FSU_0513
Conserved hypothetical protein; Identified by similarity to GB:AAM23515.1; match to protein family HMM PF07075.
 
 
  0.643
FSU_2986
Glycosyl hydrolase, family 16; Identified by match to protein family HMM PF00722.
 
 
 0.635
FSU_0162
Putative cellobiose/cellodextrin phosphorylase; Identified by similarity to GB:AAB95491.2; similarity to GB:AAC45511.1.
 
  
 0.611
FSU_0253
Putative membrane-bound lytic murein transglycosylase D; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476.
    
 0.583
FSU_2593
Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
    0.579
FSU_2150
Glycosyl hydrolase/glycosyltransferase; Identified by match to protein family HMM PF00150; match to protein family HMM PF00535.
    
 0.571
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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