STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2593Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532. (164 aa)    
Predicted Functional Partners:
FSU_2567
Putative type IV pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
  
 
0.912
pilC
Pilus assembly protein PilC; Identified by similarity to PIR:B35384; match to protein family HMM PF00482.
 
  
 0.632
FSU_2592
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
  
    0.574
FSU_1210
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.553
FSU_0703
Type II secretion system protein; Identified by match to protein family HMM PF00437.
  
 
 0.541
FSU_3107
Putative general secretion pathway protein E; Identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157.
  
 
 0.541
pilD
Type 4 prepilin-like protein leader peptide processing enzyme; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.
 
  
 0.529
FSU_2595
Glycogen synthase-like protein; Identified by similarity to SP:P39125; match to protein family HMM PF08323.
       0.467
FSU_2828
DNA internalization competence protein ComEC/Rec2-like protein; Identified by similarity to SP:P39695; match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
  
  
 0.462
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.