Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FSU_2598Hypothetical protein; Identified by glimmer; putative. (210 aa)    
Predicted Functional Partners:
FSU_2599
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.803
FSU_2600
Hypothetical protein; Identified by glimmer; putative.
       0.773
recF
Putative DNA replication and repair protein recF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
       0.773
FSU_0101
Putative lipoprotein.
  
     0.763
FSU_3094
Conserved hypothetical protein; Identified by similarity to GB:AAO77240.1.
  
   
 0.759
FSU_2254
Two component regulator propeller family protein.
  
     0.751
FSU_2120
FG-GAP repeat protein; Identified by match to protein family HMM PF01839.
  
     0.748
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
     0.747
FSU_0631
Hypothetical protein; Identified by glimmer; putative.
  
     0.726
FSU_0402
Conserved domain protein; Identified by similarity to PIR:T07884.
  
     0.705
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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