rub_2 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rub_2

Rubredoxin; Identified by similarity to SP:P00269; match to protein family HMM PF00301. (53 aa)

Predicted Functional Partners:

gltB

0.578

FSU_2621

0.537

FSU_2619

0.517

ald

0.463

nuoF

0.432

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_2619	gltB	FSU_2619	FSU_2320	Putative lipoprotein, TIGR02171; Identified by match to protein family HMM TIGR02171.	Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.590
FSU_2619	rub_2	FSU_2619	FSU_2620	Putative lipoprotein, TIGR02171; Identified by match to protein family HMM TIGR02171.	Rubredoxin; Identified by similarity to SP:P00269; match to protein family HMM PF00301.	0.517
FSU_2621	rub_2	FSU_2621	FSU_2620	Putative 4'-phosphopantetheinyl transferase; Identified by similarity to SP:P39135; match to protein family HMM PF01648; Belongs to the P-Pant transferase superfamily.	Rubredoxin; Identified by similarity to SP:P00269; match to protein family HMM PF00301.	0.537
ald	gltB	FSU_0366	FSU_2320	Aldehyde dehydrogenase; Identified by similarity to SP:P46329; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.820
ald	rub_2	FSU_0366	FSU_2620	Aldehyde dehydrogenase; Identified by similarity to SP:P46329; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Rubredoxin; Identified by similarity to SP:P00269; match to protein family HMM PF00301.	0.463
gltB	FSU_2619	FSU_2320	FSU_2619	Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Putative lipoprotein, TIGR02171; Identified by match to protein family HMM TIGR02171.	0.590
gltB	ald	FSU_2320	FSU_0366	Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Aldehyde dehydrogenase; Identified by similarity to SP:P46329; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.820
gltB	rub_2	FSU_2320	FSU_2620	Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Rubredoxin; Identified by similarity to SP:P00269; match to protein family HMM PF00301.	0.578
nuoF	rub_2	FSU_2665	FSU_2620	NADH-quinone oxidoreductase, F subunit; Identified by similarity to SP:O07948; match to protein family HMM PF01512.	Rubredoxin; Identified by similarity to SP:P00269; match to protein family HMM PF00301.	0.432
rub_2	FSU_2619	FSU_2620	FSU_2619	Rubredoxin; Identified by similarity to SP:P00269; match to protein family HMM PF00301.	Putative lipoprotein, TIGR02171; Identified by match to protein family HMM TIGR02171.	0.517
rub_2	FSU_2621	FSU_2620	FSU_2621	Rubredoxin; Identified by similarity to SP:P00269; match to protein family HMM PF00301.	Putative 4'-phosphopantetheinyl transferase; Identified by similarity to SP:P39135; match to protein family HMM PF01648; Belongs to the P-Pant transferase superfamily.	0.537
rub_2	ald	FSU_2620	FSU_0366	Rubredoxin; Identified by similarity to SP:P00269; match to protein family HMM PF00301.	Aldehyde dehydrogenase; Identified by similarity to SP:P46329; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.463
rub_2	gltB	FSU_2620	FSU_2320	Rubredoxin; Identified by similarity to SP:P00269; match to protein family HMM PF00301.	Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.578
rub_2	nuoF	FSU_2620	FSU_2665	Rubredoxin; Identified by similarity to SP:P00269; match to protein family HMM PF00301.	NADH-quinone oxidoreductase, F subunit; Identified by similarity to SP:O07948; match to protein family HMM PF01512.	0.432