STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2622Glycosyl hydrolase, family 16; Identified by match to protein family HMM PF00722. (340 aa)    
Predicted Functional Partners:
FSU_2592
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
 
 0.751
FSU_2623
ebsC protein; Identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.701
FSU_3030
Putative chitinase; Identified by match to protein family HMM PF00704; Belongs to the glycosyl hydrolase 18 family.
  
    0.608
FSU_2290
Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.542
FSU_2272
Alpha-galactosidase; Identified by match to protein family HMM PF02065; match to protein family HMM PF03422.
 
  
  0.531
FSU_1195
Endo-1,4-beta-xylanase; Identified by similarity to SP:P10478; match to protein family HMM PF00331.
 
     0.502
FSU_0206
Xylanase; Identified by similarity to GB:AAB53151.1; match to protein family HMM PF02055; Belongs to the glycosyl hydrolase 30 family.
 
   
 0.500
FSU_2070
Cellodextrinase; Identified by similarity to GB:AAA50210.1; match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
  0.498
FSU_2273
Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.
 
     0.491
FSU_2294
Xylanase XynB; Identified by match to protein family HMM PF00331; match to protein family HMM PF03422.
 
     0.491
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.