Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2624Sensory box/GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254. (289 aa)    
Predicted Functional Partners:
FSU_2947
HD domain protein; Identified by match to protein family HMM PF01966.
 
    0.949
FSU_0146
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966.
 
    0.927
FSU_2948
HD domain protein; Identified by match to protein family HMM PF01966.
 
    0.917
FSU_2413
HD/GAF domain protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF01966.
  
 0.901
FSU_0748
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 0.899
FSU_2301
Response regulator/HD domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966.
 
    0.890
FSU_1666
GGDEF/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990.
 
 
  0.885
FSU_2297
Response regulator/HD domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966.
 
    0.875
FSU_0525
EAL/GGDEF domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
 
  0.822
FSU_2564
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
 
  0.796
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (26%) [HD]