Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2625Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408. (307 aa)    
Predicted Functional Partners:
FSU_0637
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to SP:P15263; match to protein family HMM PF00155; match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.796
FSU_2624
Sensory box/GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
       0.773
lysS
lysine--tRNA ligase; Identified by similarity to SP:P14825; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.701
FSU_0499
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to SP:P14290; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.653
lpxB
lipid-A-disaccharide synthetase; Identified by similarity to SP:P10441; match to protein family HMM PF02684; Belongs to the LpxB family.
 
  
  0.570
FSU_2623
ebsC protein; Identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.526
FSU_2622
Glycosyl hydrolase, family 16; Identified by match to protein family HMM PF00722.
       0.482
FSU_0363
Putative UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Identified by similarity to SP:P21645; match to protein family HMM PF00132.
 
  
  0.450
FSU_3218
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.426
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852.
 
     0.420
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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