Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FSU_2655Outer membrane protein, OmpH family; Identified by similarity to GB:AAD23980.1; match to protein family HMM PF03938. (171 aa)    
Predicted Functional Partners:
FSU_2654
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
 
  
 0.962
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
 
   0.807
FSU_2879
Hypothetical protein; Identified by glimmer; putative.
    
 
 0.800
FSU_3094
Conserved hypothetical protein; Identified by similarity to GB:AAO77240.1.
  
   
 0.785
FSU_3310
Putative membrane protein.
  
     0.767
FSU_2125
Putative lipoprotein.
  
     0.762
FSU_2120
FG-GAP repeat protein; Identified by match to protein family HMM PF01839.
  
     0.759
FSU_0402
Conserved domain protein; Identified by similarity to PIR:T07884.
  
     0.750
FSU_2812
Putative UDP-2,3-diacylglucosamine hydrolase; Identified by similarity to SP:P43341; match to protein family HMM PF00149.
  
     0.750
FSU_2254
Two component regulator propeller family protein.
  
     0.742
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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