STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2657Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF07992; match to protein family HMM TIGR02032. (395 aa)    
Predicted Functional Partners:
FSU_0444
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040.
 
 
 0.970
FSU_0745
Conserved hypothetical protein; Identified by similarity to GB:AAM02858.1; match to protein family HMM PF01266.
  
  
 
0.928
FSU_2658
Ferredoxin; Identified by match to protein family HMM PF00037.
 
     0.812
etfB
Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:O85691; match to protein family HMM PF01012.
  
 
 0.785
FSU_2659
Putative lipoprotein; Identified by similarity to GB:BAC14728.1.
       0.480
FSU_2660
Hypothetical protein; Identified by glimmer; putative.
       0.480
FSU_2051
Putative phosphomannomutase; Identified by similarity to GB:AAG41717.1; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR03990.
  
     0.443
nuoB
NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
 
     0.437
etfA
Electron transfer flavoprotein, alpha subunit; Identified by similarity to SP:O85692; match to protein family HMM PF00766; match to protein family HMM PF01012.
  
 
 0.423
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.