Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
FSU_2657Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF07992; match to protein family HMM TIGR02032. (395 aa)    
Predicted Functional Partners:
FSU_2658
Ferredoxin; Identified by match to protein family HMM PF00037.
 
     0.808
FSU_0444
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040.
 
 
 0.797
etfB
Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:O85691; match to protein family HMM PF01012.
  
 
 0.765
FSU_1626
Identified by match to protein family HMM PF01564.
     
  0.557
FSU_0391
Identified by match to protein family HMM PF00494.
  
 
 0.554
FSU_2659
Putative lipoprotein; Identified by similarity to GB:BAC14728.1.
       0.480
FSU_2660
Hypothetical protein; Identified by glimmer; putative.
       0.480
FSU_2738
Flavin reductase domain protein.
    
 0.471
FSU_2418
Putative 4-hydroxybenzoate polyprenyltransferase; Identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475; Belongs to the UbiA prenyltransferase family.
  
 
 0.448
FSU_2051
Putative phosphomannomutase; Identified by similarity to GB:AAG41717.1; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR03990.
  
     0.443
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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