Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2658Ferredoxin; Identified by match to protein family HMM PF00037. (64 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
 
 
 0.877
FSU_2657
Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF07992; match to protein family HMM TIGR02032.
 
     0.808
FSU_2156
Phosphoadenosine phosphosulfate reductase domain protein; Identified by match to protein family HMM PF01507.
  
 
 0.638
nuoE
NADH-quinone oxidoreductase, E subunit; Identified by similarity to SP:P33601; match to protein family HMM PF01257.
    
 0.616
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
     
  0.610
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.591
nuoF
NADH-quinone oxidoreductase, F subunit; Identified by similarity to SP:O07948; match to protein family HMM PF01512.
    
  0.505
FSU_2659
Putative lipoprotein; Identified by similarity to GB:BAC14728.1.
       0.480
FSU_2660
Hypothetical protein; Identified by glimmer; putative.
       0.480
FSU_0548
Ferredoxin; Identified by match to protein family HMM PF00037.
    
 0.467
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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