Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_2690Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name. (478 aa)    
Predicted Functional Partners:
FSU_2691
Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name.
  
 
0.986
FSU_1701
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.980
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    0.902
FSU_3094
Conserved hypothetical protein; Identified by similarity to GB:AAO77240.1.
 
 
 0.859
FSU_1703
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.784
FSU_2692
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
       0.768
FSU_3310
Putative membrane protein.
  
     0.761
FSU_2654
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
 
     0.755
FSU_2125
Putative lipoprotein.
 
     0.744
FSU_0791
Putative lipoprotein; Identified by similarity to GB:AAM72991.1.
  
     0.724
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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