STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2691Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name. (366 aa)    
Predicted Functional Partners:
FSU_2690
Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name.
  
 
0.986
FSU_1701
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.982
FSU_3094
Conserved hypothetical protein; Identified by similarity to GB:AAO77240.1.
 
 
 0.825
FSU_1703
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.784
FSU_2692
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
       0.768
FSU_2654
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
 
     0.737
FSU_0700
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.668
FSU_1356
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
     0.654
FSU_3310
Putative membrane protein.
  
     0.615
FSU_1296
Putative membrane protein; Identified by match to protein family HMM PF02405.
  
  
 0.606
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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