Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
FSU_2700HrgA protein; Identified by similarity to GB:AAO31536.1; match to protein family HMM PF04373. (318 aa)    
Predicted Functional Partners:
FSU_2217
Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.
 
    0.692
hsdS
Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.
  
    0.645
hsdR
Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.636
FSU_3014
Conserved hypothetical protein; Identified by similarity to GB:AAR13137.1.
  
    0.636
FSU_0355
Conserved domain protein; Identified by similarity to GB:AAM39783.1.
  
    0.504
FSU_1756
Conserved hypothetical protein; Identified by similarity to GB:AAM31899.1.
  
    0.504
FSU_1814
Conserved domain protein; Identified by similarity to GB:AAO90472.1.
  
    0.504
FSU_2628
Conserved hypothetical protein; Identified by similarity to GB:AAO78146.1.
  
    0.504
FSU_2699
Conserved domain protein; Identified by similarity to GB:AAL18444.1.
       0.479
FSU_0784
Conserved domain protein; Identified by similarity to GB:CAD84813.1; match to protein family HMM PF07676.
  
     0.461
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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