Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2704Lipase/acylhydrolase, GDSL family; Identified by match to protein family HMM PF00657. (350 aa)    
Predicted Functional Partners:
FSU_2289
Carbohydrate binding protein, CMB family 6; Identified by similarity to GB:AAG02558.1; match to protein family HMM PF03422.
 
 
   0.690
FSU_2702
Hypothetical protein; Identified by glimmer; putative.
       0.642
FSU_2703
Hypothetical protein; Identified by glimmer; putative.
       0.642
FSU_0802
Conserved hypothetical protein; Identified by similarity to GB:AAO78441.1.
  
     0.617
FSU_2273
Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.
  
 
  0.509
FSU_2288
Beta-galactosidase; Identified by similarity to PIR:T30551; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
  
  
  0.470
FSU_2701
Hypothetical protein; Identified by glimmer; putative.
       0.469
FSU_2150
Glycosyl hydrolase/glycosyltransferase; Identified by match to protein family HMM PF00150; match to protein family HMM PF00535.
   
 0.428
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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