Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2712Identified by match to protein family HMM PF00149. (275 aa)    
Predicted Functional Partners:
FSU_0252
Identified by match to protein family HMM PF00023.
  
 
 0.806
rluB
Pseudouridine synthase B, ribosomal large subunit; Identified by similarity to SP:P37765; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.
       0.773
FSU_2714
Phosphatase, Ppx/GppA family; Identified by match to protein family HMM PF02541.
       0.733
guaA
GMP synthase; Identified by similarity to SP:P04079; match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00888.
    
 0.637
FSU_2715
Hypothetical protein; Identified by glimmer; putative.
       0.615
FSU_1828
Conserved hypothetical protein; Identified by similarity to GB:BAB79866.1; match to protein family HMM PF08719; match to protein family HMM TIGR02464.
  
     0.509
nadA
Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
       0.497
FSU_2716
Repeat protein.
       0.485
FSU_2997
Non-ribosomal peptide synthetase; Identified by similarity to SP:P27206; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668.
  
  
 0.464
FSU_2514
Hypothetical protein; Identified by glimmer; putative.
 
     0.455
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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