STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2729Conserved domain protein; Identified by similarity to PIR:G64575. (1048 aa)    
Predicted Functional Partners:
FSU_2730
Protein kinase domain protein.
 
    0.938
FSU_2732
Von Willebrand factor type A domain protein; Identified by similarity to GB:AAR07664.1; match to protein family HMM PF00092.
 
     0.927
FSU_2727
Conserved domain protein; Identified by similarity to GB:AAP24919.1.
 
    0.922
FSU_3012
Conserved hypothetical protein; Identified by similarity to PIR:E69792.
  
    0.904
FSU_2726
Hypothetical protein; Identified by glimmer; putative.
       0.789
FSU_2731
Conserved hypothetical protein; Identified by similarity to PIR:G64573.
       0.781
FSU_2728
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_2733
Sigma-54 dependent regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF07728.
       0.558
FSU_0537
Conserved domain protein; Identified by similarity to PIR:AC0074; match to protein family HMM PF00092.
 
     0.529
FSU_1135
Putative type IIG restriction endonuclease and DNA modification methyltransferase; Possibly an isoschizomer of Hpy99ORF1365P found in Helicobacter pylori; identified by match to protein family HMM PF02384; match to protein family HMM PF07674.
 
  
 0.499
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.