Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
FSU_2738Flavin reductase domain protein. (185 aa)    
Predicted Functional Partners:
FSU_2207
Putative lipoprotein.
  
     0.579
FSU_1921
Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.
  
 
 0.575
nifJ
Pyruvate synthase; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
 0.550
ald
Aldehyde dehydrogenase; Identified by similarity to SP:P46329; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
    
 0.540
ribF
Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.
    
 0.536
FSU_1371
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
    
 0.533
FSU_0506
Dihydroorotate oxidase; Identified by similarity to SP:P45477; match to protein family HMM PF01180.
  
 
  0.515
FSU_1362
Conserved hypothetical protein; Identified by similarity to PIR:A96992.
 
 
 0.507
ribE
Riboflavin synthase, alpha subunit; Identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187.
    
  0.499
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
    
  0.498
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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