STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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FSU_2759Putative exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (66 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; Identified by match to protein family HMM PF02601; match to protein family HMM TIGR00237; Belongs to the XseA family.
  
 0.993
FSU_2760
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01RS1379; match to protein family HMM PF00005.
       0.773
FSU_2753
Identified by match to protein family HMM PF09335.
       0.568
FSU_2754
Hypothetical protein; Identified by glimmer; putative.
       0.565
FSU_2755
Hypothetical protein; Identified by glimmer; putative.
       0.565
FSU_2756
Hypothetical protein; Identified by glimmer; putative.
       0.565
FSU_2757
Putative lipoprotein; Overlaps another CDS with the same product name.
       0.565
FSU_2758
Putative lipoprotein; Overlaps another CDS with the same product name.
       0.565
FSU_1299
Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
  
 0.469
crtE
Geranylgeranyl diphosphate synthase; Identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
  
 0.469
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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