STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2764Putative ABC transporter, permease protein; Identified by similarity to GB:BAC51330.1; match to protein family HMM PF02405. (364 aa)    
Predicted Functional Partners:
FSU_2763
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.980
FSU_1181
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.928
FSU_2762
Identified by match to protein family HMM PF02470.
 
 0.928
FSU_2761
Putative lipoprotein.
  
 
 0.814
FSU_1449
Identified by match to protein family HMM PF02470.
 
 0.806
FSU_1607
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.746
FSU_2690
Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name.
  
  
 0.589
FSU_1697
Identified by match to protein family HMM PF02470.
 
 0.572
FSU_2691
Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name.
  
  
 0.549
cysA
Sulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.
    
  0.544
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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