STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cel-3Endoglucanase 3; Exhibits both endoglucanase and cellobiosidase activities. (658 aa)    
Predicted Functional Partners:
FSU_2005
Cellulase; Identified by similarity to GB:AAD39739.1; match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.762
FSU_2349
Conserved domain protein; Identified by similarity to GB:AAK76811.1; match to protein family HMM TIGR03296.
  
  0.759
FSU_2303
Glycosyl hydrolase, family 8; Identified by match to protein family HMM PF01270.
  
     0.741
FSU_0810
Glycosyl hydrolase, family 9; Identified by similarity to SP:P04954; match to protein family HMM PF00041; match to protein family HMM PF00759.
  
  
  0.739
FSU_2398
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
     0.728
FSU_2397
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.724
FSU_2130
Putative acetylxylan esterase; Identified by similarity to GB:AAB69091.1.
  
 
  0.692
FSU_0206
Xylanase; Identified by similarity to GB:AAB53151.1; match to protein family HMM PF02055; Belongs to the glycosyl hydrolase 30 family.
  
   
 0.686
FSU_0809
Glycosyl hydrolase, family 9; Identified by similarity to SP:P26221; match to protein family HMM PF00759.
  
     0.684
FSU_2619
Putative lipoprotein, TIGR02171; Identified by match to protein family HMM TIGR02171.
  
     0.684
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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