Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
FSU_2794Fibrobacter succinogenes major paralogous domain protein; Identified by match to protein family HMM TIGR02145. (662 aa)    
Predicted Functional Partners:
FSU_0931
Putative aspartoacylase; Identified by similarity to SP:P46446; match to protein family HMM PF04952.
  
     0.691
FSU_2932
Cadherin domain protein; Identified by match to protein family HMM PF00028.
  
     0.688
FSU_2931
Cadherin domain protein; Identified by match to protein family HMM PF00028.
  
     0.687
FSU_2502
Fibro-slime domain protein; Identified by match to protein family HMM TIGR02148.
  
   0.673
FSU_3272
Conserved domain protein; Identified by match to protein family HMM PF04685.
  
     0.669
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
 
   0.652
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
   0.646
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.642
FSU_0286
Fimbriae-associated domain protein; Identified by similarity to GP:3929312.
  
 
   0.638
FSU_0816
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.623
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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