Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2799Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025. (485 aa)    
Predicted Functional Partners:
FSU_1215
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.985
FSU_0181
Putative tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706; match to protein family HMM TIGR01007.
 
 
 0.983
FSU_2077
Putative tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706; match to protein family HMM TIGR01007.
 
 
 0.982
FSU_1216
Polysaccharide biosynthesis/export protein; Identified by similarity to SP:Q46629; match to protein family HMM PF02563.
  
 
 0.938
FSU_1863
Capsular polysaccharide biosynthesis domain protein; Identified by similarity to SP:P76388; match to protein family HMM PF02563.
  
 
 0.938
rmd
GDP-4-dehydro-6-deoxy-D-mannose reductase; Identified by similarity to GB:AAG35361.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
  
  
 0.935
FSU_2065
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
  
 0.930
FSU_0499
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to SP:P14290; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.915
FSU_0637
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to SP:P15263; match to protein family HMM PF00155; match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.915
FSU_2589
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; match to protein family HMM TIGR02379; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.915
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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