STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2812Putative UDP-2,3-diacylglucosamine hydrolase; Identified by similarity to SP:P43341; match to protein family HMM PF00149. (239 aa)    
Predicted Functional Partners:
lpxB
lipid-A-disaccharide synthetase; Identified by similarity to SP:P10441; match to protein family HMM PF02684; Belongs to the LpxB family.
 
  
 0.938
FSU_0363
Putative UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Identified by similarity to SP:P21645; match to protein family HMM PF00132.
  
  
 0.926
FSU_3094
Conserved hypothetical protein; Identified by similarity to GB:AAO77240.1.
  
   
 0.792
FSU_2125
Putative lipoprotein.
 
     0.763
FSU_3310
Putative membrane protein.
  
     0.763
FSU_2655
Outer membrane protein, OmpH family; Identified by similarity to GB:AAD23980.1; match to protein family HMM PF03938.
  
     0.750
FSU_2690
Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name.
 
     0.711
FSU_0402
Conserved domain protein; Identified by similarity to PIR:T07884.
  
     0.693
FSU_0718
Putative membrane protein.
 
     0.675
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
     0.606
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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