FSU_2851 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_2851

Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331. (762 aa)

Predicted Functional Partners:

FSU_3135

0.772

FSU_2269

0.771

FSU_2741

0.771

FSU_2898

0.770

FSU_0577

0.769

xynC

0.769

FSU_2866

0.769

FSU_3006

0.768

FSU_2274

0.764

FSU_3191

0.763

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0577	FSU_2269	FSU_0577	FSU_2269	Putative pectate lyase; Identified by match to protein family HMM PF00544.	Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.	0.689
FSU_0577	FSU_2274	FSU_0577	FSU_2274	Putative pectate lyase; Identified by match to protein family HMM PF00544.	Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.	0.716
FSU_0577	FSU_2741	FSU_0577	FSU_2741	Putative pectate lyase; Identified by match to protein family HMM PF00544.	Putative xylanase; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.	0.773
FSU_0577	FSU_2851	FSU_0577	FSU_2851	Putative pectate lyase; Identified by match to protein family HMM PF00544.	Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.	0.769
FSU_0577	FSU_2866	FSU_0577	FSU_2866	Putative pectate lyase; Identified by match to protein family HMM PF00544.	BNR repeat protein; Identified by match to protein family HMM PF02012.	0.776
FSU_0577	FSU_2898	FSU_0577	FSU_2898	Putative pectate lyase; Identified by match to protein family HMM PF00544.	Putative lipoprotein.	0.757
FSU_0577	FSU_3006	FSU_0577	FSU_3006	Putative pectate lyase; Identified by match to protein family HMM PF00544.	Putative endo-1,4-beta-xylanase; Identified by similarity to SP:P35811; match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.	0.773
FSU_0577	FSU_3135	FSU_0577	FSU_3135	Putative pectate lyase; Identified by match to protein family HMM PF00544.	Pectate lyase family protein/carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF00544; match to protein family HMM PF03422.	0.927
FSU_0577	FSU_3191	FSU_0577	FSU_3191	Putative pectate lyase; Identified by match to protein family HMM PF00544.	Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616.	0.720
FSU_0577	xynC	FSU_0577	FSU_0777	Putative pectate lyase; Identified by match to protein family HMM PF00544.	Endo-1,4-beta-xylanase; Cleaves xylans with the production of xylose, xylobiose and xylo-oligosaccharides.	0.907
FSU_2269	FSU_0577	FSU_2269	FSU_0577	Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.	Putative pectate lyase; Identified by match to protein family HMM PF00544.	0.689
FSU_2269	FSU_2741	FSU_2269	FSU_2741	Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.	Putative xylanase; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.	0.753
FSU_2269	FSU_2851	FSU_2269	FSU_2851	Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.	Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.	0.771
FSU_2269	FSU_2866	FSU_2269	FSU_2866	Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.	BNR repeat protein; Identified by match to protein family HMM PF02012.	0.688
FSU_2269	FSU_2898	FSU_2269	FSU_2898	Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.	Putative lipoprotein.	0.736
FSU_2269	FSU_3006	FSU_2269	FSU_3006	Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.	Putative endo-1,4-beta-xylanase; Identified by similarity to SP:P35811; match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.	0.869
FSU_2269	FSU_3135	FSU_2269	FSU_3135	Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.	Pectate lyase family protein/carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF00544; match to protein family HMM PF03422.	0.717
FSU_2269	FSU_3191	FSU_2269	FSU_3191	Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.	Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616.	0.770
FSU_2269	xynC	FSU_2269	FSU_0777	Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.	Endo-1,4-beta-xylanase; Cleaves xylans with the production of xylose, xylobiose and xylo-oligosaccharides.	0.871
FSU_2274	FSU_0577	FSU_2274	FSU_0577	Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.	Putative pectate lyase; Identified by match to protein family HMM PF00544.	0.716