STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2878Extracellular solute-binding protein, PotD/PotF family; Identified by match to protein family HMM PF01547. (354 aa)    
Predicted Functional Partners:
cysA
Sulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.
 0.914
cysT
Sulfate ABC transporter, permease protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.
   
 
  0.490
FSU_2879
Hypothetical protein; Identified by glimmer; putative.
       0.484
FSU_1555
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
  0.474
FSU_1639
Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.
    
  0.437
FSU_2163
Conserved domain protein; Identified by similarity to GB:BAC62598.1.
    
  0.437
FSU_2076
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
    
  0.423
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
    
  0.423
FSU_1466
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   
 
  0.410
FSU_3055
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   
 
  0.410
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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