STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2883Conserved hypothetical protein; Identified by similarity to PIR:G81669. (138 aa)    
Predicted Functional Partners:
FSU_0621
Conserved domain protein; Identified by similarity to SP:Q8TTI1; match to protein family HMM PF04101.
  
     0.749
FSU_0669
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
  
     0.718
FSU_1359
Conserved domain protein; Identified by similarity to GB:AAO77279.1; match to protein family HMM PF07715.
  
     0.680
FSU_2107
Hypothetical protein; Identified by glimmer; putative.
  
     0.618
FSU_1479
Conserved hypothetical protein; Identified by similarity to GB:AAO79205.1; match to protein family HMM PF08885.
  
     0.557
FSU_2881
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; overlaps another CDS with the same product name.
       0.520
FSU_2882
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; overlaps another CDS with the same product name.
       0.520
FSU_0444
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040.
  
     0.506
FSU_1135
Putative type IIG restriction endonuclease and DNA modification methyltransferase; Possibly an isoschizomer of Hpy99ORF1365P found in Helicobacter pylori; identified by match to protein family HMM PF02384; match to protein family HMM PF07674.
  
 
 0.505
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.
  
 
 0.505
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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