| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| FSU_0415 | recA | FSU_0415 | FSU_2927 | Identified by match to protein family HMM PF00149. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.754 |
| FSU_1321 | FSU_2126 | FSU_1321 | FSU_2126 | ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614. | Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | 0.948 |
| FSU_1321 | FSU_2509 | FSU_1321 | FSU_2509 | ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614. | Putative DNA topoisomerase III; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056. | 0.938 |
| FSU_1321 | FSU_2904 | FSU_1321 | FSU_2904 | ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614. | Putative DNA topoisomerase III; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751. | 0.938 |
| FSU_1321 | dnaN | FSU_1321 | FSU_1802 | ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.924 |
| FSU_1321 | polA | FSU_1321 | FSU_1227 | ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.964 |
| FSU_1321 | radA | FSU_1321 | FSU_0747 | ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.609 |
| FSU_1321 | recA | FSU_1321 | FSU_2927 | ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.945 |
| FSU_1321 | recQ | FSU_1321 | FSU_1079 | ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614. | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. | 0.813 |
| FSU_1321 | sbcD | FSU_1321 | FSU_1640 | ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614. | Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.943 |
| FSU_2126 | FSU_1321 | FSU_2126 | FSU_1321 | Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614. | 0.948 |
| FSU_2126 | FSU_2509 | FSU_2126 | FSU_2509 | Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | Putative DNA topoisomerase III; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056. | 0.621 |
| FSU_2126 | FSU_2904 | FSU_2126 | FSU_2904 | Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | Putative DNA topoisomerase III; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751. | 0.559 |
| FSU_2126 | dnaN | FSU_2126 | FSU_1802 | Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.954 |
| FSU_2126 | polA | FSU_2126 | FSU_1227 | Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.970 |
| FSU_2126 | recA | FSU_2126 | FSU_2927 | Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.792 |
| FSU_2126 | recQ | FSU_2126 | FSU_1079 | Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. | 0.823 |
| FSU_2126 | sbcD | FSU_2126 | FSU_1640 | Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.815 |
| FSU_2509 | FSU_1321 | FSU_2509 | FSU_1321 | Putative DNA topoisomerase III; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056. | ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614. | 0.938 |
| FSU_2509 | FSU_2126 | FSU_2509 | FSU_2126 | Putative DNA topoisomerase III; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056. | Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | 0.621 |
