Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
FSU_2957Stage II sporulation protein D-like protein; Identified by similarity to SP:P07372; similarity to SP:Q02113; match to protein family HMM PF08486; match to protein family HMM TIGR02669. (404 aa)    
Predicted Functional Partners:
FSU_2956
Radical SAM domain protein; Identified by match to protein family HMM PF01938; match to protein family HMM PF04055.
       0.775
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.679
FSU_2426
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
  
     0.570
FSU_0764
Identified by match to protein family HMM PF01520.
 
 
 0.553
FSU_1009
Conserved hypothetical protein; Identified by similarity to PIR:C97301; match to protein family HMM PF09579.
  
    0.551
FSU_0463
M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01551.
 
   
 0.454
FSU_1446
Putative soluble lytic murein transglycosylase; Identified by similarity to SP:P03810; match to protein family HMM PF01464.
 
    0.400
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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