STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2985MATE efflux family protein; Identified by similarity to GB:BAB64566.1; match to protein family HMM PF01554; match to protein family HMM TIGR00797. (482 aa)    
Predicted Functional Partners:
FSU_2984
Hypothetical protein; Identified by glimmer; putative.
       0.741
FSU_2983
Hypothetical protein; Identified by glimmer; putative.
       0.736
FSU_2500
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
  
     0.522
FSU_0391
Identified by match to protein family HMM PF00494.
   
    0.521
gapA
Glyceraldehyde 3-phosphate dehydrogenase A; Identified by similarity to SP:P06977; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
    0.490
rpsA
Ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575; match to protein family HMM TIGR00717.
   
    0.483
FSU_2986
Glycosyl hydrolase, family 16; Identified by match to protein family HMM PF00722.
       0.472
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: medium (44%) [HD]