STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2986Glycosyl hydrolase, family 16; Identified by match to protein family HMM PF00722. (473 aa)    
Predicted Functional Partners:
FSU_2290
Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.672
FSU_2273
Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.
 
     0.658
FSU_2592
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
 
 
 0.635
FSU_3030
Putative chitinase; Identified by match to protein family HMM PF00704; Belongs to the glycosyl hydrolase 18 family.
  
    0.600
FSU_2012
Putative chitinase; Identified by match to protein family HMM PF00704.
  
  
 0.576
FSU_2272
Alpha-galactosidase; Identified by match to protein family HMM PF02065; match to protein family HMM PF03422.
 
  
  0.574
FSU_3191
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616.
  
     0.563
FSU_2795
Xylanase-like protein; Identified by similarity to GB:AAB63573.1.
 
   
 0.560
FSU_2070
Cellodextrinase; Identified by similarity to GB:AAA50210.1; match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
  0.555
FSU_2525
Conserved domain protein; Identified by similarity to GB:AAO79221.1.
  
     0.555
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.