STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2998Putative anti-sigma-B factor antagonist; Identified by similarity to SP:P17903; match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family. (99 aa)    
Predicted Functional Partners:
FSU_0789
ATPase domain protein.
 
 
 0.988
FSU_3000
Putative membrane protein; Identified by match to protein family HMM PF07228; overlaps another CDS with the same product name.
 
 
 0.976
FSU_2103
Sensor histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM PF07228.
 
 
 0.911
FSU_1028
rsbU domain protein; Identified by similarity to SP:P40399; match to protein family HMM PF07228.
 
 
 0.904
FSU_2384
HAMP domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM PF07228.
 
 
 0.902
FSU_0147
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
  
  
 0.853
FSU_2997
Non-ribosomal peptide synthetase; Identified by similarity to SP:P27206; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668.
 
   
 0.850
FSU_0748
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.793
FSU_2999
Putative membrane protein; Identified by match to protein family HMM PF01554; overlaps another CDS with the same product name.
       0.768
ispE
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.684
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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