STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2999Putative membrane protein; Identified by match to protein family HMM PF01554; overlaps another CDS with the same product name. (576 aa)    
Predicted Functional Partners:
FSU_3000
Putative membrane protein; Identified by match to protein family HMM PF07228; overlaps another CDS with the same product name.
       0.773
FSU_2997
Non-ribosomal peptide synthetase; Identified by similarity to SP:P27206; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668.
  
    0.770
FSU_2998
Putative anti-sigma-B factor antagonist; Identified by similarity to SP:P17903; match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
       0.768
FSU_2500
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
  
     0.767
ispE
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.689
FSU_0391
Identified by match to protein family HMM PF00494.
   
    0.521
FSU_2996
FtsK/SpoIIIE family protein; Identified by similarity to SP:P46889; match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family.
       0.498
gapA
Glyceraldehyde 3-phosphate dehydrogenase A; Identified by similarity to SP:P06977; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
    0.490
rpsA
Ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575; match to protein family HMM TIGR00717.
   
    0.483
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
     
 0.402
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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