FSU_3014 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_3014

Conserved hypothetical protein; Identified by similarity to GB:AAR13137.1. (398 aa)

Predicted Functional Partners:

FSU_3013

0.983

FSU_3012

0.971

FSU_1135

0.687

hsdM

0.687

FSU_2218

0.687

hsdS

0.648

FSU_2217

0.648

FSU_2700

0.636

FSU_0355

0.449

FSU_1756

0.449

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0355	FSU_2217	FSU_0355	FSU_2217	Conserved domain protein; Identified by similarity to GB:AAM39783.1.	Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.449
FSU_0355	FSU_2700	FSU_0355	FSU_2700	Conserved domain protein; Identified by similarity to GB:AAM39783.1.	HrgA protein; Identified by similarity to GB:AAO31536.1; match to protein family HMM PF04373.	0.504
FSU_0355	FSU_3014	FSU_0355	FSU_3014	Conserved domain protein; Identified by similarity to GB:AAM39783.1.	Conserved hypothetical protein; Identified by similarity to GB:AAR13137.1.	0.449
FSU_0355	hsdS	FSU_0355	FSU_1811	Conserved domain protein; Identified by similarity to GB:AAM39783.1.	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.449
FSU_1135	FSU_2217	FSU_1135	FSU_2217	Putative type IIG restriction endonuclease and DNA modification methyltransferase; Possibly an isoschizomer of Hpy99ORF1365P found in Helicobacter pylori; identified by match to protein family HMM PF02384; match to protein family HMM PF07674.	Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.954
FSU_1135	FSU_2700	FSU_1135	FSU_2700	Putative type IIG restriction endonuclease and DNA modification methyltransferase; Possibly an isoschizomer of Hpy99ORF1365P found in Helicobacter pylori; identified by match to protein family HMM PF02384; match to protein family HMM PF07674.	HrgA protein; Identified by similarity to GB:AAO31536.1; match to protein family HMM PF04373.	0.431
FSU_1135	FSU_3014	FSU_1135	FSU_3014	Putative type IIG restriction endonuclease and DNA modification methyltransferase; Possibly an isoschizomer of Hpy99ORF1365P found in Helicobacter pylori; identified by match to protein family HMM PF02384; match to protein family HMM PF07674.	Conserved hypothetical protein; Identified by similarity to GB:AAR13137.1.	0.687
FSU_1135	hsdS	FSU_1135	FSU_1811	Putative type IIG restriction endonuclease and DNA modification methyltransferase; Possibly an isoschizomer of Hpy99ORF1365P found in Helicobacter pylori; identified by match to protein family HMM PF02384; match to protein family HMM PF07674.	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.889
FSU_1756	FSU_2217	FSU_1756	FSU_2217	Conserved hypothetical protein; Identified by similarity to GB:AAM31899.1.	Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.449
FSU_1756	FSU_2700	FSU_1756	FSU_2700	Conserved hypothetical protein; Identified by similarity to GB:AAM31899.1.	HrgA protein; Identified by similarity to GB:AAO31536.1; match to protein family HMM PF04373.	0.504
FSU_1756	FSU_3014	FSU_1756	FSU_3014	Conserved hypothetical protein; Identified by similarity to GB:AAM31899.1.	Conserved hypothetical protein; Identified by similarity to GB:AAR13137.1.	0.449
FSU_1756	hsdS	FSU_1756	FSU_1811	Conserved hypothetical protein; Identified by similarity to GB:AAM31899.1.	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.449
FSU_2217	FSU_0355	FSU_2217	FSU_0355	Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Conserved domain protein; Identified by similarity to GB:AAM39783.1.	0.449
FSU_2217	FSU_1135	FSU_2217	FSU_1135	Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Putative type IIG restriction endonuclease and DNA modification methyltransferase; Possibly an isoschizomer of Hpy99ORF1365P found in Helicobacter pylori; identified by match to protein family HMM PF02384; match to protein family HMM PF07674.	0.954
FSU_2217	FSU_1756	FSU_2217	FSU_1756	Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Conserved hypothetical protein; Identified by similarity to GB:AAM31899.1.	0.449
FSU_2217	FSU_2218	FSU_2217	FSU_2218	Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	0.990
FSU_2217	FSU_2700	FSU_2217	FSU_2700	Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	HrgA protein; Identified by similarity to GB:AAO31536.1; match to protein family HMM PF04373.	0.692
FSU_2217	FSU_3014	FSU_2217	FSU_3014	Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Conserved hypothetical protein; Identified by similarity to GB:AAR13137.1.	0.648
FSU_2217	hsdM	FSU_2217	FSU_1812	Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.	0.926
FSU_2217	hsdS	FSU_2217	FSU_1811	Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.	0.518