STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FSU_3030Putative chitinase; Identified by match to protein family HMM PF00704; Belongs to the glycosyl hydrolase 18 family. (418 aa)    
Predicted Functional Partners:
FSU_3029
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_2272
Alpha-galactosidase; Identified by match to protein family HMM PF02065; match to protein family HMM PF03422.
  
  
 0.709
uvrA
UvrABC system protein A; Identified by similarity to SP:O34863; match to protein family HMM PF00005.
       0.701
FSU_0196
Putative mannanase; Identified by similarity to SP:P51529; match to protein family HMM PF00150; match to protein family HMM PF02018; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.690
FSU_2249
Identified by match to protein family HMM PF00933.
     
 0.652
FSU_0810
Glycosyl hydrolase, family 9; Identified by similarity to SP:P04954; match to protein family HMM PF00041; match to protein family HMM PF00759.
  
  
  0.636
FSU_0916
Alginate lyase-like protein; Identified by similarity to GB:BAC87758.1.
 
 
 0.612
FSU_2622
Glycosyl hydrolase, family 16; Identified by match to protein family HMM PF00722.
  
    0.608
FSU_2986
Glycosyl hydrolase, family 16; Identified by match to protein family HMM PF00722.
  
    0.600
FSU_2070
Cellodextrinase; Identified by similarity to GB:AAA50210.1; match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
  0.578
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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