STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3038Conserved domain protein; Identified by similarity to GB:AAM71308.1; match to protein family HMM PF09603; match to protein family HMM TIGR02145. (489 aa)    
Predicted Functional Partners:
FSU_3037
Putative lipoprotein; Identified by match to protein family HMM TIGR02148.
  
  
0.756
FSU_3036
Hypothetical protein; Identified by glimmer; putative.
      0.691
FSU_1150
Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAC69533.1; match to protein family HMM PF01554; match to protein family HMM PF01943.
  
     0.532
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
   0.524
FSU_3310
Putative membrane protein.
  
     0.508
FSU_2254
Two component regulator propeller family protein.
  
     0.498
FSU_0402
Conserved domain protein; Identified by similarity to PIR:T07884.
  
     0.490
FSU_0791
Putative lipoprotein; Identified by similarity to GB:AAM72991.1.
  
     0.480
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
     0.480
FSU_3040
Putative lipoprotein; Identified by similarity to GB:AAM71308.1; match to protein family HMM PF09603; match to protein family HMM TIGR02145.
 
    
0.458
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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