Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_3042Putative ribonuclease BN; Identified by match to protein family HMM PF03631. (321 aa)    
Predicted Functional Partners:
FSU_3041
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_0816
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.645
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.635
FSU_0436
Conserved hypothetical protein; Identified by similarity to GB:BAC58430.1.
  
     0.606
FSU_3056
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
     0.587
FSU_2298
Acyltransferase family protein.
 
   
 0.543
FSU_0828
Conserved domain protein; Identified by match to protein family HMM PF03993.
  
     0.540
FSU_1095
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
   
 0.536
FSU_1094
Conserved hypothetical protein.
  
     0.527
FSU_2502
Fibro-slime domain protein; Identified by match to protein family HMM TIGR02148.
  
     0.527
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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