FSU_3044 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FSU_3044

Carbohydrate-binding protein, CBM 6 family; Identified by similarity to GB:AAM39473.1; match to protein family HMM PF03422. (619 aa)

Predicted Functional Partners:

FSU_1115

0.818

FSU_2273

0.806

FSU_2528

0.805

xynE

0.802

FSU_2292

0.795

FSU_2525

0.793

FSU_2294

0.791

FSU_2851

0.791

FSU_2516

0.783

FSU_2535

0.779

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_1115	FSU_2273	FSU_1115	FSU_2273	Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.	Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.	0.736
FSU_1115	FSU_2292	FSU_1115	FSU_2292	Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.	Xylanase XynD; Identified by similarity to GB:AAG36764.1; match to protein family HMM PF00331; match to protein family HMM PF03422.	0.710
FSU_1115	FSU_2294	FSU_1115	FSU_2294	Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.	Xylanase XynB; Identified by match to protein family HMM PF00331; match to protein family HMM PF03422.	0.732
FSU_1115	FSU_2516	FSU_1115	FSU_2516	Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.	Putative pectate lyase; Identified by similarity to PIR:JC7271.	0.763
FSU_1115	FSU_2525	FSU_1115	FSU_2525	Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.	Conserved domain protein; Identified by similarity to GB:AAO79221.1.	0.834
FSU_1115	FSU_2528	FSU_1115	FSU_2528	Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.	Rhamnogalacturonan lyase; Identified by similarity to GB:AAK20911.1; match to protein family HMM PF01839.	0.761
FSU_1115	FSU_2535	FSU_1115	FSU_2535	Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.	Conserved hypothetical protein; Identified by similarity to PIR:F87639.	0.924
FSU_1115	FSU_2851	FSU_1115	FSU_2851	Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.	Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.	0.722
FSU_1115	FSU_3044	FSU_1115	FSU_3044	Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.	Carbohydrate-binding protein, CBM 6 family; Identified by similarity to GB:AAM39473.1; match to protein family HMM PF03422.	0.818
FSU_1115	xynE	FSU_1115	FSU_2293	Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.	Xylanase XynE; Identified by similarity to GB:AAG36765.1; match to protein family HMM PF00331; match to protein family HMM PF03422.	0.741
FSU_2273	FSU_1115	FSU_2273	FSU_1115	Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.	Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.	0.736
FSU_2273	FSU_2525	FSU_2273	FSU_2525	Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.	Conserved domain protein; Identified by similarity to GB:AAO79221.1.	0.762
FSU_2273	FSU_2528	FSU_2273	FSU_2528	Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.	Rhamnogalacturonan lyase; Identified by similarity to GB:AAK20911.1; match to protein family HMM PF01839.	0.513
FSU_2273	FSU_2535	FSU_2273	FSU_2535	Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.	Conserved hypothetical protein; Identified by similarity to PIR:F87639.	0.644
FSU_2273	FSU_2851	FSU_2273	FSU_2851	Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.	Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.	0.418
FSU_2273	FSU_3044	FSU_2273	FSU_3044	Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.	Carbohydrate-binding protein, CBM 6 family; Identified by similarity to GB:AAM39473.1; match to protein family HMM PF03422.	0.806
FSU_2292	FSU_1115	FSU_2292	FSU_1115	Xylanase XynD; Identified by similarity to GB:AAG36764.1; match to protein family HMM PF00331; match to protein family HMM PF03422.	Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.	0.710
FSU_2292	FSU_2516	FSU_2292	FSU_2516	Xylanase XynD; Identified by similarity to GB:AAG36764.1; match to protein family HMM PF00331; match to protein family HMM PF03422.	Putative pectate lyase; Identified by similarity to PIR:JC7271.	0.757
FSU_2292	FSU_2525	FSU_2292	FSU_2525	Xylanase XynD; Identified by similarity to GB:AAG36764.1; match to protein family HMM PF00331; match to protein family HMM PF03422.	Conserved domain protein; Identified by similarity to GB:AAO79221.1.	0.623
FSU_2292	FSU_2528	FSU_2292	FSU_2528	Xylanase XynD; Identified by similarity to GB:AAG36764.1; match to protein family HMM PF00331; match to protein family HMM PF03422.	Rhamnogalacturonan lyase; Identified by similarity to GB:AAK20911.1; match to protein family HMM PF01839.	0.761

page 1 of 5

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About