STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3045Lipase/acylhydrolase, GDSL family; Identified by match to protein family HMM PF00657. (586 aa)    
Predicted Functional Partners:
FSU_2528
Rhamnogalacturonan lyase; Identified by similarity to GB:AAK20911.1; match to protein family HMM PF01839.
 
  0.980
FSU_1115
Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.
 
  
 0.818
xynE
Xylanase XynE; Identified by similarity to GB:AAG36765.1; match to protein family HMM PF00331; match to protein family HMM PF03422.
  
 
  0.806
FSU_2851
Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.
  
 
  0.806
FSU_2292
Xylanase XynD; Identified by similarity to GB:AAG36764.1; match to protein family HMM PF00331; match to protein family HMM PF03422.
  
 
  0.805
FSU_2294
Xylanase XynB; Identified by match to protein family HMM PF00331; match to protein family HMM PF03422.
  
 
  0.803
FSU_1195
Endo-1,4-beta-xylanase; Identified by similarity to SP:P10478; match to protein family HMM PF00331.
  
 
  0.799
FSU_2525
Conserved domain protein; Identified by similarity to GB:AAO79221.1.
  
  
  0.791
FSU_1114
Carbohydrate-binding protein, CBM 6 family; Identified by match to protein family HMM PF03422; match to protein family HMM PF09492; match to protein family HMM TIGR02474.
 
  
  0.788
FSU_2535
Conserved hypothetical protein; Identified by similarity to PIR:F87639.
  
  
  0.788
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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