STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3050Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145. (285 aa)    
Predicted Functional Partners:
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.578
FSU_2254
Two component regulator propeller family protein.
  
     0.551
FSU_3051
Hypothetical protein; Identified by glimmer; putative.
       0.548
FSU_1150
Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAC69533.1; match to protein family HMM PF01554; match to protein family HMM PF01943.
  
    0.538
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
       0.526
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
     0.516
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.509
FSU_3310
Putative membrane protein.
  
     0.504
FSU_0402
Conserved domain protein; Identified by similarity to PIR:T07884.
  
     0.493
FSU_0382
Cellulase; Identified by similarity to GB:AAC45377.1; match to protein family HMM PF03425.
 
     0.453
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.