STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frdCSuccinate dehydrogenase cytochrome B subunit, b558 family; Identified by similarity to GP:29340366; similarity to GB:AAO42599.1; match to protein family HMM TIGR02046. (281 aa)    
Predicted Functional Partners:
fdrA
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit; Identified by similarity to SP:P08065; similarity to GB:AAO42600.1; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811.
 
 
 0.997
fdrB
Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Identified by similarity to SP:P08066; similarity to SP:P17596; match to protein family HMM PF00037; match to protein family HMM PF00111.
 
 
 0.997
FSU_3070
Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Identified by similarity to SP:P00364; similarity to SP:P08066; match to protein family HMM PF00037; match to protein family HMM PF00111.
 
 
 0.989
fumB
Fumarate hydratase, class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.909
FSU_2081
Identified by match to protein family HMM PF02550.
     
  0.900
FSU_3231
Hydro-lyase, tartrate/fumarate family; Identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722.
     
  0.900
FSU_3233
Tartrate/fumarate family protein.
     
  0.900
argH
Argininosuccinate lyase; Identified by similarity to SP:O34858; match to protein family HMM PF00206; match to protein family HMM TIGR00838.
     
  0.800
FSU_0518
Aspartate aminotransferase; Identified by similarity to SP:P23034; match to protein family HMM PF00155.
     
  0.800
FSU_2911
Aminotransferase, class I/II; Identified by similarity to SP:O33267; match to protein family HMM PF00155.
     
  0.800
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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