STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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FSU_3068Putative type III restriction-modification system, Mod subunit; Possibly an isoschizomer of M.McaRIP found in Moraxella catarrhalis; identified by match to protein family HMM PF01555. (520 aa)    
Predicted Functional Partners:
FSU_3069
Type III restriction-modification system-like protein; Identified by similarity to SP:P08764; match to protein family HMM PF04851.
  
 0.962
FSU_0673
Type III restriction-modification system-like protein; Identified by similarity to SP:P40815; match to protein family HMM PF04851.
  
 0.843
FSU_2332
Type III restriction-modification system-like protein; Identified by similarity to SP:P08764; similarity to GB:CAD86218.1; match to protein family HMM PF04851.
 
  
 0.815
FSU_1757
Putative type III restriction-modification system, Res subunit; Possibly an isoschizomer of BfaORFC196P found in Bacteroides fragilis; identified by match to protein family HMM PF04851.
 
  
 0.618
FSU_2637
Conserved hypothetical protein; Identified by similarity to PIR:G81979.
 
      0.508
FSU_3070
Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Identified by similarity to SP:P00364; similarity to SP:P08066; match to protein family HMM PF00037; match to protein family HMM PF00111.
       0.448
FSU_1501
SNF2/helicase domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851.
 
     0.446
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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