STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3077Identified by match to protein family HMM PF00691; match to protein family HMM PF02412. (774 aa)    
Predicted Functional Partners:
FSU_1288
Identified by match to protein family HMM PF00691; match to protein family HMM PF09603; match to protein family HMM TIGR02145.
  
     0.746
FSU_2502
Fibro-slime domain protein; Identified by match to protein family HMM TIGR02148.
  
   
 0.665
FSU_3052
Fibro-slime domain protein; Identified by similarity to PIR:C95146; similarity to GB:BAB47241.1; match to protein family HMM TIGR02148.
  
   
 0.631
FSU_1359
Conserved domain protein; Identified by similarity to GB:AAO77279.1; match to protein family HMM PF07715.
  
   
 0.577
thyA
Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.
    
  0.571
guaA
GMP synthase; Identified by similarity to SP:P04079; match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00888.
  
 
  0.568
FSU_3078
Hypothetical protein; Identified by glimmer; putative.
       0.535
FSU_2403
Identified by match to protein family HMM TIGR01352.
  
 
   0.524
FSU_2619
Putative lipoprotein, TIGR02171; Identified by match to protein family HMM TIGR02171.
 
  0.516
FSU_0517
Putative membrane protein.
  
     0.495
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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