STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3107Putative general secretion pathway protein E; Identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157. (592 aa)    
Predicted Functional Partners:
pilC
Pilus assembly protein PilC; Identified by similarity to PIR:B35384; match to protein family HMM PF00482.
 
 0.975
pilD
Type 4 prepilin-like protein leader peptide processing enzyme; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.
 
 
 0.842
FSU_1463
Twitching motility protein-like protein.
 
  
 0.780
FSU_0658
Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.
 
 
 
 0.674
FSU_3111
Competence protein ComEA helix-hairpin-helix repeat region protein; Identified by similarity to SP:P39694; match to protein family HMM PF00633; match to protein family HMM TIGR00426.
  
  
 0.671
FSU_0964
Putative bacterial type II/III secretion system protein; Identified by similarity to SP:P03666; match to protein family HMM PF00263; match to protein family HMM PF03958.
 
  
 0.669
FSU_0661
Fimbrial assembly protein PilN; Identified by match to protein family HMM PF05137.
  
 
 0.650
FSU_0174
Pilin domain protein; Identified by similarity to GB:AAA53563.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
 0.612
FSU_0960
Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
 0.612
FSU_1212
Pilin domain protein; Identified by similarity to GB:CAB60734.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
 0.612
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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