STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3112Conserved domain protein; Identified by similarity to GB:BAB88862.1. (303 aa)    
Predicted Functional Partners:
FSU_0661
Fimbrial assembly protein PilN; Identified by match to protein family HMM PF05137.
  
 
 0.904
FSU_3114
Putative methyltransferase; Identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095.
       0.784
FSU_3113
Hypothetical protein; Identified by glimmer; putative.
       0.778
FSU_3111
Competence protein ComEA helix-hairpin-helix repeat region protein; Identified by similarity to SP:P39694; match to protein family HMM PF00633; match to protein family HMM TIGR00426.
     
 0.704
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Identified by similarity to SP:P04951; match to protein family HMM PF02348.
       0.669
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.620
FSU_3116
Identified by match to protein family HMM PF01694.
       0.611
FSU_3117
Kinase, pfkB family; Identified by match to protein family HMM PF00294.
       0.601
FSU_3118
Hypothetical protein; Identified by glimmer; putative.
       0.589
gatC
glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
       0.530
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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