STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_3116Identified by match to protein family HMM PF01694. (297 aa)    
Predicted Functional Partners:
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
  
    0.794
FSU_3117
Kinase, pfkB family; Identified by match to protein family HMM PF00294.
  
    0.783
FSU_3118
Hypothetical protein; Identified by glimmer; putative.
       0.757
FSU_0419
Conserved hypothetical protein; Identified by similarity to GB:BAC95865.1.
   
 0.745
FSU_0764
Identified by match to protein family HMM PF01520.
  
   0.722
FSU_3114
Putative methyltransferase; Identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095.
       0.634
FSU_3112
Conserved domain protein; Identified by similarity to GB:BAB88862.1.
       0.611
FSU_3113
Hypothetical protein; Identified by glimmer; putative.
       0.605
FSU_3119
Alkaline phosphatase domain protein.
  
    0.587
FSU_3111
Competence protein ComEA helix-hairpin-helix repeat region protein; Identified by similarity to SP:P39694; match to protein family HMM PF00633; match to protein family HMM TIGR00426.
       0.543
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.